Genome-wide meta-analysis increases to 71 the number of confirmed Crohn's diseasesusceptibility loci.

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Abstract

AbstractWe undertook a meta-analysis of six Crohn's disease genome-wide association studies (GWAS) comprising 6,333 affected individuals (cases) and 15,056 controls and followed up the top association signals in 15,694 cases, 14,026 controls and 414 parent-offspring trios. We identified 30 new susceptibility loci meeting genome-wide significance (P < 5 × 10⁻⁸). A series of in silico analyses highlighted particular genes within these loci and, together with manual curation, implicated functionally interesting candidate genes including SMAD3, ERAP2, IL10, IL2RA, TYK2, FUT2, DNMT3A, DENND1B, BACH2 and TAGAP. Combined with previously confirmed loci, these results identify 71 distinct loci with genome-wide significant evidence for association with Crohn's disease.
Lingua originaleEnglish
pagine (da-a)1118-1125
Numero di pagine8
RivistaNature Genetics
Volume42
Stato di pubblicazionePublished - 2010

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Meta-Analysis
Genome
Genome-Wide Association Study
Computer Simulation
Interleukin-10
Genes

All Science Journal Classification (ASJC) codes

  • Genetics

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title = "Genome-wide meta-analysis increases to 71 the number of confirmed Crohn's diseasesusceptibility loci.",
abstract = "AbstractWe undertook a meta-analysis of six Crohn's disease genome-wide association studies (GWAS) comprising 6,333 affected individuals (cases) and 15,056 controls and followed up the top association signals in 15,694 cases, 14,026 controls and 414 parent-offspring trios. We identified 30 new susceptibility loci meeting genome-wide significance (P < 5 × 10⁻⁸). A series of in silico analyses highlighted particular genes within these loci and, together with manual curation, implicated functionally interesting candidate genes including SMAD3, ERAP2, IL10, IL2RA, TYK2, FUT2, DNMT3A, DENND1B, BACH2 and TAGAP. Combined with previously confirmed loci, these results identify 71 distinct loci with genome-wide significant evidence for association with Crohn's disease.",
keywords = "genome-wide scan.meta-analysis.crohn's disease",
author = "Mario Cottone",
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journal = "Nature Genetics",
issn = "1061-4036",
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T1 - Genome-wide meta-analysis increases to 71 the number of confirmed Crohn's diseasesusceptibility loci.

AU - Cottone, Mario

PY - 2010

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N2 - AbstractWe undertook a meta-analysis of six Crohn's disease genome-wide association studies (GWAS) comprising 6,333 affected individuals (cases) and 15,056 controls and followed up the top association signals in 15,694 cases, 14,026 controls and 414 parent-offspring trios. We identified 30 new susceptibility loci meeting genome-wide significance (P < 5 × 10⁻⁸). A series of in silico analyses highlighted particular genes within these loci and, together with manual curation, implicated functionally interesting candidate genes including SMAD3, ERAP2, IL10, IL2RA, TYK2, FUT2, DNMT3A, DENND1B, BACH2 and TAGAP. Combined with previously confirmed loci, these results identify 71 distinct loci with genome-wide significant evidence for association with Crohn's disease.

AB - AbstractWe undertook a meta-analysis of six Crohn's disease genome-wide association studies (GWAS) comprising 6,333 affected individuals (cases) and 15,056 controls and followed up the top association signals in 15,694 cases, 14,026 controls and 414 parent-offspring trios. We identified 30 new susceptibility loci meeting genome-wide significance (P < 5 × 10⁻⁸). A series of in silico analyses highlighted particular genes within these loci and, together with manual curation, implicated functionally interesting candidate genes including SMAD3, ERAP2, IL10, IL2RA, TYK2, FUT2, DNMT3A, DENND1B, BACH2 and TAGAP. Combined with previously confirmed loci, these results identify 71 distinct loci with genome-wide significant evidence for association with Crohn's disease.

KW - genome-wide scan.meta-analysis.crohn's disease

UR - http://hdl.handle.net/10447/55211

M3 - Article

VL - 42

SP - 1118

EP - 1125

JO - Nature Genetics

JF - Nature Genetics

SN - 1061-4036

ER -