• 691 Citations
  • 15 h-Index
20022020

Research output per year

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Research Output

  • 691 Citations
  • 15 h-Index
  • 42 Article
  • 17 Chapter
  • 5 Other
  • 4 Conference contribution
2020

The Alternating BWT: An algorithmic perspective

Giancarlo, R., Sciortino, M., Rosone, G. & Manzini, G., 2020, In : Theoretical Computer Science. 812, p. 230-243 14 p.

Research output: Contribution to journalArticle

2019

Analyzing big datasets of genomic sequences: Fast and scalable collection of k-mer statistics

Rombo, S. E., Giancarlo, R., Sorella, M., Ferraro Petrillo, U. & Cattaneo, G., 2019, In : BMC Bioinformatics. 20, p. 138-151 14 p.

Research output: Contribution to journalArticle

2 Citations (Scopus)

A new class of searchable and provably highly compressible string transformations

Sciortino, M., Giancarlo, R., Rosone, G. & Manzini, G., 2019, Leibniz International Proceedings in Informatics, LIPIcs. p. 1-12 12 p. (LEIBNIZ INTERNATIONAL PROCEEDINGS IN INFORMATICS).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

1 Citation (Scopus)
1 Citation (Scopus)
2018

Block Sorting-Based Transformations on Words: Beyond the Magic BWT

Giancarlo, R., Rosone, G., Restivo, A., Sciortino, M., Rosone, G. & Manzini, G., 2018, p. 1-17. 17 p.

Research output: Contribution to conferenceOther

3 Citations (Scopus)

Informational and linguistic analysis of large genomic sequence collections via efficient Hadoop cluster algorithms

Giancarlo, R., Roscigno, G., Ferraro Petrillo, U., Cattaneo, G. & Ferraro Petrillo, U., 2018, In : Bioinformatics. 34, p. 1826-1833 8 p.

Research output: Contribution to journalArticle

11 Citations (Scopus)

In vitro versus in vivo compositional landscapes of histone sequence preferences in eucaryotic genomes

Giancarlo, R., Rombo, S. E. & Utro, F., 2018, In : Bioinformatics. 34, p. 3454-3460 7 p.

Research output: Contribution to journalArticle

3 Citations (Scopus)
2017

An effective extension of the applicability of alignment-free biological sequence comparison algorithms with Hadoop

Giancarlo, R., Roscigno, G., Petrillo, U. F. & Cattaneo, G., 2017, In : THE JOURNAL OF SUPERCOMPUTING. 73, p. 1467-1483 17 p.

Research output: Contribution to journalArticle

18 Citations (Scopus)

Computation Cluster Validation in the Big Data Era

Giancarlo, R., Utro, F. & Utro, F., 2017, Reference Module in the Life Sciences.

Research output: Chapter in Book/Report/Conference proceedingChapter

FASTdoop: A versatile and efficient library for the input of FASTA and FASTQ files for MapReduce Hadoop bioinformatics applications

Giancarlo, R., Roscigno, G., Petrillo, U. F. & Cattaneo, G., 2017, In : Bioinformatics. 33, p. 1575-1577 3 p.

Research output: Contribution to journalArticle

16 Citations (Scopus)

Mapreduce in computational biology - A synopsis

Giancarlo, R., Roscigno, G., Di Biasi, L., Petrillo, U. F., Piotto, S. & Cattaneo, G., 2017, Advances in Artificial Life, Evolutionary Computation, and Systems Chemistry, 11th Italian Workshop, WIVACE 2016, Fisciano, Italy, October 4-6, 2016, Revised Selected Papers. p. 53-64 12 p. (COMMUNICATIONS IN COMPUTER AND INFORMATION SCIENCE).

Research output: Chapter in Book/Report/Conference proceedingChapter

5 Citations (Scopus)

MapReduce in Computational Biology Via Hadoop and Spark

Giancarlo, R., Roscigno, G., Petrillo, U. F., Cattaneo, G. & Ferraro Petrillo, U., 2017, Reference Module in the Life Sciences.

Research output: Chapter in Book/Report/Conference proceedingChapter

Network Centralities and Node Ranking

Rombo, S. E., Giancarlo, R. & Landolina, F., 2017, Reference Module in Life Sciences.

Research output: Chapter in Book/Report/Conference proceedingChapter

2016

Indexed Two-Dimensional String Matching

Giancarlo, R., 2016, Encyclopedia of Algorithms. p. 973-977 5 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Table Compression

Giancarlo, R., 2016, Encyclopedia of Algorithms. p. 2193-2198 6 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

10 Citations (Scopus)
2015

Alignment-Free Sequence Comparison over Hadoop for Computational Biology

Giancarlo, R., Roscigno, G., Petrillo, U. F. & Cattaneo, G., 2015, Proceedings of the International Conference on Parallel Processing Workshops. p. 184-192 9 p.

Research output: Chapter in Book/Report/Conference proceedingConference contribution

6 Citations (Scopus)

Bayesian versus data driven model selection for microarray data

Lo Bosco, G., Giancarlo, R., Utro, F. & Lo Bosco, G., 2015, In : Natural Computing. 14, p. 393-402 10 p.

Research output: Contribution to journalArticle

2 Citations (Scopus)
15 Citations (Scopus)
4 Citations (Scopus)
2014
37 Citations (Scopus)

GIMT: A tool for ontology and goal modeling in BDI Multi-Agent Design

Seidita, V., Giancarlo, R., Sabatucci, L., Ribino, P., Lodato, C., Nogare, D. D., Giancarlo, R., Lopes, S., Seidita, V. & Cossentino, M., 2014. 8 p.

Research output: Contribution to conferenceOther

3 Citations (Scopus)
2013

Algorithmics for the Life Sciences

Giancarlo, R., 2013, The Power of Algorithms. p. 167-186 20 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

7 Citations (Scopus)

Forewords-Special Issue Combinatorial Pattern Matching 2011

Giancarlo, R. & Manzini, G., 2013, In : Theoretical Computer Science. 483, p. 1-182 182 p.

Research output: Contribution to journalArticle

The Three Steps of Clustering in the Post-Genomic Era

Lo Bosco, G. & Giancarlo, R., 2013, Biological Knowledge Discovery Handbook. p. 521-556 36 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

2012
13 Citations (Scopus)

Stability-Based Model Selection for High Throughput Genomic Data: An Algorithmic Paradigm

Giancarlo, R. & Utro, F., 2012, Lecture Notes in Computer Science, Vol. 7597. p. 260-270 10 p. (LECTURE NOTES IN COMPUTER SCIENCE).

Research output: Chapter in Book/Report/Conference proceedingChapter

2 Citations (Scopus)

Textual data compression in computational biology: Algorithmic techniques.

Giancarlo, R. & Utro, 2012, In : Computer Science Review. 6, p. 1-25 25 p.

Research output: Contribution to journalArticle

18 Citations (Scopus)
2011

Algoritmica Per Le Scienze Della Vita

Giancarlo, R., 2011, L'Informatica Invisibile. p. 165-183 19 p. (Minerva Saggi).

Research output: Chapter in Book/Report/Conference proceedingChapter

Genome-wide characterization of chromatin binding and nucleosome spacing activity of the nucleosome remodelling ATPase ISWI

Corona, D., Lo Bosco, G., Giancarlo, R., Di Gesu', V., Lo Bosco, G., Sala, A., Pinello, L. & Toto, M., 2011, In : EMBO Journal. 30, p. 1766-1777 11 p.

Research output: Contribution to journalArticle

43 Citations (Scopus)

Novel Combinatorial and Information Theoretic Alignment Free Distances for Biological Data Mining

Epifanio, C., Sciortino, M., Giancarlo, R. & Gabriele, A., 2011, Algorithms in Computational Molecular Biology: Techniques, Approaches and Applications. 42 p. (WILEY SERIES ON BIOINFORMATICS).

Research output: Chapter in Book/Report/Conference proceedingChapter

2 Citations (Scopus)

Preface

Giancarlo, R. & Manzini, G., 2011, Combinatorial Pattern Matching, 22nd Annual Symposium. p. 1-2 2 p. (Lecture Notes in Computer Science).

Research output: Chapter in Book/Report/Conference proceedingChapter

Speeding up the Consensus Clustering methodology for microarray data analysis

Giancarlo, R., Utro, F. & Utro, F., 2011, In : Algorithms for Molecular Biology. 6, 24 p.

Research output: Contribution to journalArticle

15 Citations (Scopus)

The Three Steps of Clustering in the Post-Genomic Era: A Synopsis

Lo Bosco, G., Giancarlo, R., Utro, Utro, F. & Pinello, L., 2011, Computational Intelligence Methods for Bioinformatics and Biostatistics, 7th International Meeting, CIBB 2010, Palermo, Italy, September 2010 Revised Selected Papers. p. 13-30 18 p. (LECTURE NOTES IN COMPUTER SCIENCE).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

13 Citations (Scopus)
2010

Distance Functions, Clustering Algorithms and Microarray Data Analysis

Giancarlo, R., Lo Bosco, G. & Pinello, L., 2010, Learning and Intelligent Optimization 4th International Conference, LION 4, Venice, Italy, January 18-22, 2010. Selected Papers. p. 125-138 14 p. (LECTURE NOTES IN COMPUTER SCIENCE).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

26 Citations (Scopus)

Functional Information, Biomolecular Messages and Complexity of BioSequences and Structures

Corona, D., Giancarlo, R., Gabriele, A. & Utro, F., 2010. 13 p.

Research output: Contribution to conferenceOther

2009

Basic Statistical Indices for SeqAn

Rombo, S. E., Giancarlo, R., Rombo, S. E. & Utro, F., 2009, Biological Sequence Analysis Using the SeqAn C++ Library. p. 271-282 12 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

1 Citation (Scopus)

Statistical Indexes for Computational and Data Driven Class Discovery in Microarray Data

Giancarlo, R. & Utro, F., 2009, Biological Data Mining. p. 295-336 42 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Textual Data Compression In Computational Biology: A synopsis

Giancarlo, R. & Utro, F., 2009, In : Bioinformatics. 2009, p. 1575-1586 12 p.

Research output: Contribution to journalArticle

65 Citations (Scopus)

The Myriad Virtes of Wavelet Trees

Giancarlo, R., Ferragina, P. & Manzini, G., 2009, In : Information and Computation. 207, p. 849-866 18 p.

Research output: Contribution to journalArticle

30 Citations (Scopus)
2008

2D-Pattern Indexing

Giancarlo, R., 2008, Encyclopedia of Algorithms. p. 1-3 3 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Algorithms in Bioinformatics

Giancarlo, R. & Hannenhalli, S., 2008, In : IEEE/ACM Transactions on Computational Biology and Bioinformatics. 5, p. 482-483 2 p.

Research output: Contribution to journalArticle

6 Citations (Scopus)
39 Citations (Scopus)

New Results in Finding Common Neighborhoods in Massive Graphs in the Data Streaming Model

Giancarlo, R., Racz, Buchsbaum & Giancarlo, R., 2008, In : Theoretical Computer Science. 407, p. 302-309 8 p.

Research output: Contribution to journalArticle

3 Citations (Scopus)

Periodicity and repetitions in parameterized strings

Giancarlo, R. & Apostolico, A., 2008, In : Discrete Applied Mathematics. 156, p. 1389-1398 10 p.

Research output: Contribution to journalArticle

19 Citations (Scopus)

SAIL: String Algorithms, Information and Learning, Preface and Special Issue

Giancarlo, R. & Lonardi, S., 2008, In : Theoretical Computer Science. 395, p. 135-136

Research output: Contribution to journalArticle

Table Compression

Giancarlo, R., 2008, Encyclopedia of Algorithms. p. 973-975 3 p.

Research output: Chapter in Book/Report/Conference proceedingChapter